YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|42784199, gi|...
Protein type: Transmembrane with Signal Peptide
Type Confidence: 0.98
Topology Confidence: 0.89
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKRKMAGKWF SFLSALIILL GIAMPQVKAE VMNRETYKMD WSYSNSKQRE IKTEIIKTAS  60
   61 GSIAYCLTPD LRSPNGDDLP EMGKTSDVVY RVLLNGYPQK SPSELGVATT EEAHYATQLA 120
  121 VWIAANELTE EDLVAKNERV HNLMKRLVEA SKKETGSQDT FFKVNLVDPQ TATQKGDYLE 180
  181 TGFYAVQTNA VSGSYTILPE NAPKGLRIVN ENGEEKSILT INEKFKILIP KNTSSGNFKM 240
  241 KVKSTLTNLQ AMAFKGSEKV QNTTVLLQRN SEKISTDLVV NWESVGSLKI MKLGEKKEVL 300
  301 KGAVFEVSNE NFKQNVTTND KGIAELGNLP IGIYSVKEIQ APVGYVLDGS VKKIEVKTGE 360
  361 TAVLELKNEN VKGELEITKV DVTDGNTKLP NAEFTIYNEQ GKEVVKGKTD EKGVAKFKLP 420
  421 YGKYTYKETI APNGYVINEE TFGFEIKENG EIIKHIVQDK KVEGELEITK VDIADGNTKL 480
  481 PNAEFTIYNE QGKEVVKGKT DEKGVAKFKL PYGKYTYKET IAPNGYVINE ETFAFEIKED 540
  541 GEIIKHIVQD KKVEGELEIT KVDVADGNTK LPNAEFTIYN EQGKEVVKGK TDEKGVAKFK 600
  601 LPYGKYTYKE TIAPNGYVIN EETFAFEIKE DGEIIKHIVK NKKEEKASLP SKPNKPTPNG 660
  661 EVKPSADVKP MQQPSTHNEV RLPATGGVGN EFTVLSVLGL VFIIAGAYVL RMKNRKEM

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle