YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|42784103, gi\|...
Protein type:	Globular with Signal Peptide
Type Confidence:	0.87
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKKVRKAIIP AAGLGTRFLP ATKAMPKEML PIVDKPTIQY IVEEAVKSGI EDIIIVTGKT  60
   61 KRSIEDHFDN AFELEQNLLE KKKYELLEKV QASSKMVDIH YIRQKEPKGL GHAVWCARKF 120
  121 IGDEPFAVLL GDDIVQAEKP CLRQLIEEYD KTLSSVIGVQ TVPEDETHRY GIIDPLEQEG 180
  181 RRYQVRNFVE KPAAGTAPSN LAIMGRYVLT PEIFMFLDQQ HIGAGGEIQL TDAIQSLNEI 240
  241 QRVFAYDFEG KRYDVGEKLG FVQTTIEMAL QHPELRDDMV TMMKKILEEQ TNQES

Type	Start	End	Confidence
Signal Peptide	1	24	0.85
N-region	1	15
H-region	16	21
C-region	22	24
Cleavage Site	24	25
Non-Cytoplasmic	25	295	0.99