YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|42784080, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.54
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDYTDLLIKL GLSAILGFAI GLERELKRKP LGLKTCLVIS IISCLLTIVS IKAAYNLPHT  60
   61 DHMNMDPLRL AAQIVSGIGF LGAGVILRRG NDSIAGLTTA AMIWGASGIG IAVGAGFYIE 120
  121 AIFGMCFLMI SVELIPLTMK FVGPRSFRQR DIAVKLVVRN MDNIPVVIEE IKEMDIKVKN 180
  181 MKLKTLENGS HYLHLKLCID QKRHTADVYY ALQHLESVQQ TEVESM

Type	Start	End	Confidence
Non-Cytoplasmic	1	5	0.54
Transmembrane Helix	6	22	0.55
Cytoplasmic	23	30	0.89
Transmembrane Helix	31	54	0.87
Non-Cytoplasmic	55	68	0.88
Transmembrane Helix	69	87	0.96
Cytoplasmic	88	93	0.87
Transmembrane Helix	94	115	0.90
Non-Cytoplasmic	116	120	0.70
Transmembrane Helix	121	142	0.89
Cytoplasmic	143	226	0.96