YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|42784011, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.85
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	276	0.97
Transmembrane Helix	277	298	0.89
Non-Cytoplasmic	299	313	0.82
Transmembrane Helix	314	331	0.86
Cytoplasmic	332	338	0.65
Transmembrane Helix	339	362	0.88
Non-Cytoplasmic	363	388	0.85
Transmembrane Helix	389	407	0.92
Cytoplasmic	408	416	0.84
Transmembrane Helix	417	439	0.89
Non-Cytoplasmic	440	447	0.74
Transmembrane Helix	448	471	0.85
Cytoplasmic	472	506	0.98
Transmembrane Helix	507	527	0.89
Non-Cytoplasmic	528	539	0.77
Transmembrane Helix	540	561	0.89
Cytoplasmic	562	566	0.79
Transmembrane Helix	567	587	0.88
Non-Cytoplasmic	588	601	0.85
Transmembrane Helix	602	625	0.87
Cytoplasmic	626	633	0.92
Transmembrane Helix	634	656	0.90
Non-Cytoplasmic	657	662	0.87

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNKVALLGNP NTGKTSLFNA LTGSYEYVGN WSGVTVEKKV GKLKDKQGTL IDLPGVYDLN  60
   61 PVSRDEGVVT KFLLTEEFHH MLNIVDSSQF ERNMHLTLQL LEFGKPVSIG LNMIDVAKQR 120
  121 GIVIDVKRLS ELLGVTVVPV VARSGKGCEE LLATLKENDK NEKKPFIISY GVRMDEGIGE 180
  181 VISLLEKANY EHPRWLALQF LSNNEVVEKE MKALPIYKEL IAIRSRLEEK LDCTLEEHIY 240
  241 KTREAYIEKL KTNVMKHEKE GKIPFSEKID RLITHKILGL PIFLAVMFFI FQVTFTWIGT 300
  301 PLSDMLDEFF GGQLTDWVTA GLTSVGASDF IQALVTEGII AGVGAVLVFV PQIFALFFFI 360
  361 SLLEDSGYMA RIAVVMDRIM EFFGLNGKAF IPMIIGFGCN VPGIMAARTI EQEKERLLTV 420
  421 LVTPFMSCSA RLPVYALFAG VFFPHSQATV VFSLYVAGIV LALLVTKIMS LTILKAEKSI 480
  481 FVIELPPYRV PQVKTLWLST WEKGKGFVRK AGTFIFGGSV VIWLLNYAGP SGFGVDMGDS 540
  541 FLAMIGGFIA PLFAPLGFGT WQAAASLLTG FLAKEVVVST MAIIYAVKED VLGNVMGAHY 600
  601 TALSAYAFMF FILLYVPCLA TVAVIKRETG SAKWTIFSVV YPLVVAYVLT FIIYQVGSLL 660
  661 GF