YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|42783920, gi|...
Protein type: Transmembrane
Type Confidence: 0.99
Topology Confidence: 0.56
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIWNWLRKKK KSNTTEKNET DNSEQHANKQ EDDNKKLTRS MKHNKDNNGE QKKEGHKESS  60
   61 QGQQQHTKQN ESNQDQQQRS KQYHSDQEKQ QHSEQDDRDQ NKQQHAKQND SNQQDKQQNS 120
  121 KQNDPAQDKQ QSSKQDDSNQ GKQQDSKQGD SDQDKQQNSK QDYSDQGKQQ NSKQHNSDQG 180
  181 KQQNSKQHNS DQDKQQNSKQ HNSDQSKQQN SKQDNSDQGK QQNSKQDNSD QGKQQNSKGN 240
  241 SIYDFTKPEK DRIHSLQDLI EKLKKSSDFV NYHTSDDETM PYWISYYRPS LDGEKLQKYL 300
  301 MPTLLERPNA SLEELKEHIP MSGITITNDL QKIEDMVLKG HAIVQVNQQD QKCMLANIAI 360
  361 DNYRAPTPPL NESTVIGPQE GFVEDIDTNI NLVRKRLPVL DLQTKEMIVG EFSKTKVVMM 420
  421 YLDNLAEKDN VDFLEESLRA LEYDQINDSA YLQELMGEKS IFPLYINTER TDRVTKALID 480
  481 GKIAIFVDGS PSVLLTPVSY FDFFISPEDY NVSWLYATFS RILRLIAVLF SICATPLYVA 540
  541 ILNYHYELIP SDLLETLILS RAQVPFPPLI EALFLELAID LLREAGARLP MKVGQTLGIV 600
  601 GGIVIGQASV QAGLTSNILL IIVALSALAS FITPIYKMGN AVRLLRFPFL IFAEIGGLFG 660
  661 ISLGFIFLFT HLFRLTSLRK PYALFYPTRQ QSVKDSWIRF PLTMIDTRDV QARPQHVKKA 720
  721 AKGISTKHRS DFDD

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle