YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|42739616, gi\|...
Protein type:	Globular with Signal Peptide
Type Confidence:	0.82
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKKIIIISAT TIVIGITSFA YFSSKSPLQN NAKAVESQQH SNHQKEEIPA FPKADHNAKK  60
   61 LDNDFSVVTN PESNLVLVNK HRKLPDGYTP EDLTRPNVPF TSPKDKEKTL LRKDAADALE 120
  121 SMFEAAKKEG LELTAVSGYR SYKRQKSLHD TYVRRQGKAE ADSVSAIPGT SEHQTGLAMD 180
  181 ISSKSAKFQL EPIFGETNEG KWVAKHAHEF GFVIRYLEDK TETTEYSYEP WHLRYVGNPY 240
  241 ATYIYKHHLT LEEAMEDKK

Type	Start	End	Confidence
Signal Peptide	1	20	0.81
N-region	1	11
H-region	12	17
C-region	18	20
Cleavage Site	20	21
Non-Cytoplasmic	21	259	0.99