YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|42783540, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.87
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MMEKDERFKQ AEFGAIVGIV GNIILAIIKA VIGYIGNSKA LLADAVHSAS DVIGSLAVLF  60
   61 GLRAAKQPPD EDHPYGHGKA ESISAIIVAV LLFIVGIEIA ISSIKAFSQE LEPPKGITIF 120
  121 AVVLSIIVKE GMFQYKFRLG KRVNSDAIIA NAYEHRSDVF SSIAALIGIC AAIIGGKFGL 180
  181 DWLVYADPIA GLFVSLLVAK MAWSIGTEAI HATLDHVLHE EDVIPLREAV LQIDGVKKIG 240
  241 SLYAREHGHY VIVDIKVSVD PYITVEEGHR IGKRVKETLM LQDNVQNVFV HINPYSPN

Type	Start	End	Confidence
Cytoplasmic	1	12	0.92
Transmembrane Helix	13	33	0.95
Non-Cytoplasmic	34	42	0.76
Transmembrane Helix	43	62	0.90
Cytoplasmic	63	82	0.85
Transmembrane Helix	83	104	0.91
Non-Cytoplasmic	105	115	0.78
Transmembrane Helix	116	133	0.92
Cytoplasmic	134	157	0.87
Transmembrane Helix	158	176	0.94
Non-Cytoplasmic	177	183	0.69
Transmembrane Helix	184	204	0.87
Cytoplasmic	205	298	0.96