YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|47557101, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.96
Topology Confidence:	0.88
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQRFIKWLAV ITSLDLLIVL LGGALVTKTG SGQGCGKSWP LCNGEFVPSN LSMETIIELS  60
   61 HRLTSGSAGI LVTLLCILSW KYYKHVRETK TLAILSFVFL VAQALMGAAA VVWGQMPAVL 120
  121 AIHFGISLIS FASVILLTCL IFEIDQKFDA RSLIMDKKMK FHIYGVTIYS YIVVYTGALV 180
  181 RHERASLACP DFPLCSKNRP MPTQLHEWVQ MGHRVAAMLI FAWILYAMIL AIRHYKQQPV 240
  241 VYWGWIISFI LVTLQAIVGI LVVFTNASLS MALLHSLFIS CLFAVLCYLV MLGTRSKVNA 300
  301 KEAASTSKQT K

Type	Start	End	Confidence
Cytoplasmic	1	6	0.91
Transmembrane Helix	7	27	0.88
Non-Cytoplasmic	28	60	0.92
Transmembrane Helix	61	83	0.88
Cytoplasmic	84	91	0.91
Transmembrane Helix	92	113	0.94
Non-Cytoplasmic	114	119	0.85
Transmembrane Helix	120	142	0.94
Cytoplasmic	143	160	0.95
Transmembrane Helix	161	180	0.94
Non-Cytoplasmic	181	210	0.96
Transmembrane Helix	211	232	0.90
Cytoplasmic	233	240	0.88
Transmembrane Helix	241	264	0.93
Non-Cytoplasmic	265	270	0.88
Transmembrane Helix	271	292	0.94
Cytoplasmic	293	311	0.95