YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|42783010, gi|...
Protein type: Transmembrane
Type Confidence: 0.77
Topology Confidence: 0.70
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKRDMTKFHT NKGAGYFMIL FLLLFLLLLA RFFYIQATGT VHNQDLDKLA KQKHSKTGVL  60
   61 EANRGTIYDQ NGHVLAQDAN SYKLVAELKG AKPVENKEDT AKKIAGVLGK DEEKILATLN 120
  121 KKDKSQVEFG TLGKDLTKEQ KEQIEALKLP GISFITENAR VYPNGDFASY VIGHAKPNEE 180
  181 GTSVGQFGLE KSLDKYLSAS NGKVAYTGDR KGVSLDGGTV NVKAPKNGDN TYLTIDQRVQ 240
  241 SYLEDAMKSA SKHYDPESLI GIVADPKTGK ILAMSSKPSY DPNDRQIQYF FNDAIANAFE 300
  301 PGSTMKIFTL AAAINEGVYK GQDYYQSGTY QVGNRKIKDH NGGAGWGSIT FDEGVERSSN 360
  361 VAFAILGDQK LGPDRFRKYI HAFGLDEKTN IDLPGEGSNT ILFDQQIQQV TTAFGQGSTV 420
  421 TPIQLVQAAT AIANDGKMMK PYTIDKIVDP ITGEVKLEHK PEEVGKPVTK ETAAQVRQLL 480
  481 ERVVTSPKGT GTAYKVDGYS VGGKTGTAQI PDGKGGYMTG RENYIFSFLG MAPMDDPQLV 540
  541 VYVAVKQPKL KDDESGAQPL ADIFKYVTKN SLEYLKIKPN EVKDPKKYVK EQQTAVPDVT 600
  601 GKTMEEAKKA IDKAKLRPIV LGEGKVQQQV PKATEQTLKG DRVFLVGDQP TMPNIQGWAL 660
  661 RDVMNLAKTL KLNLKPTGTG YVTEQSVPEG TLLQPGTELG VTLVPPLEPQ QEAEKP

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle