YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|42782819, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.49
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	8	0.86
Transmembrane Helix	9	29	0.91
Non-Cytoplasmic	30	64	0.82
Transmembrane Helix	65	85	0.94
Cytoplasmic	86	94	0.73
Transmembrane Helix	95	115	0.93
Non-Cytoplasmic	116	124	0.76
Transmembrane Helix	125	148	0.90
Cytoplasmic	149	157	0.81
Transmembrane Helix	158	178	0.94
Non-Cytoplasmic	179	198	0.75
Transmembrane Helix	199	218	0.80
Cytoplasmic	219	247	0.65
Transmembrane Helix	248	274	0.82
Non-Cytoplasmic	275	287	0.51
Transmembrane Helix	288	308	0.84
Cytoplasmic	309	314	0.43
Transmembrane Helix	315	336	0.88
Non-Cytoplasmic	337	340	0.49

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLKSSNQRFG MTMGILIFLI LCAIYISLTN GTFDITITDV FKTLFRIDPV PDHDLVIFEF  60
   61 RLPRIIIAGL VGLGLGVAGA VIQGITRNGL ADPGILGVNA GAGTAIVIFM FFFQGQLKST 120
  121 DWVSIMMMPM FGLVGGLGAA IIIYLFSWKN GKLDSQRLLL TGIAIGSGFG AFSMYLSLKM 180
  181 KSTDFEMAAV WVSGSIYSAN WKYIIAMLPW LIILIPLIQK KAYLLDLFQL EETSITSLGV 240
  241 SLEREKSILL LSSIGLVSAC VAVSGSIGFI GLMAPHIAKR LVGIQHKHII PTCGVIGMFL 300
  301 VIASDFIAKT VFTPVELPVG IVISIVGVPY FLYLLYKAKA