YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|42737840, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.73
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	11	0.88
Transmembrane Helix	12	35	0.87
Cytoplasmic	36	56	0.88
Transmembrane Helix	57	85	0.73
Non-Cytoplasmic	86	90	0.63
Transmembrane Helix	91	111	0.84
Cytoplasmic	112	138	0.87
Transmembrane Helix	139	159	0.91
Non-Cytoplasmic	160	173	0.91
Transmembrane Helix	174	195	0.91
Cytoplasmic	196	203	0.85
Transmembrane Helix	204	225	0.92
Non-Cytoplasmic	226	232	0.79
Transmembrane Helix	233	256	0.89
Cytoplasmic	257	292	0.93
Transmembrane Helix	293	315	0.89
Non-Cytoplasmic	316	353	0.92
Transmembrane Helix	354	374	0.95
Cytoplasmic	375	393	0.90
Transmembrane Helix	394	415	0.88
Non-Cytoplasmic	416	421	0.72
Transmembrane Helix	422	441	0.91
Cytoplasmic	442	496	0.98

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEQLVEWLVG QVWSIGLVVF ALGAGVYFTI ATRFLQIRYF KEMIKLLFEG KSSETGISSF  60
   61 QAFCLALSGR VGIGNIAGVA TAIAFGGPGA VFWMWVMALL GAASAFVEST LSQVYKSKVG 120
  121 NEYRGGTPYF IEKGLKMKWF AIIVAVVVTL SYGVLLPGIQ SSSIAVGFEN SNGISKYITG 180
  181 ILLVLLLAAI IFGGVKRIAG VSQMLVPFMA IGYVIVTCIV LIANVTEIPS MFALIFSSAF 240
  241 GINEMFGGIV GAAIAWGVKR AVFSNVAGVG EATYSSAAAE VSHPAKQGLV QAFSVYIDTI 300
  301 VVCTATALMI LITGMYNVIP EGKSAIVKNI GNVDAGPIYT QQAVETVMTG FGPLFISIAI 360
  361 FFFAFTTLLA YYYIAETTLT YLDRELKHSW LKPVLKIGFL IMVYIGSVES ASLLWNLGDL 420
  421 GIGSMAWLNL IAILLLSKIA LKVLKDYEAQ KKEGKDPVFD PKNIGIEGLT FWEERSKEIE 480
  481 RKNYKEQSVV DDSLKL