YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|42737805, gi\|...
Protein type:	Globular with Signal Peptide
Type Confidence:	0.86
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNNRLLKQLQ NMKMNKKSLG AVALTAGIIG TTLIPQNAYA HGFVEKPGSR SALCSPTYGA  60
   61 LNVNCGSIMY EPQSLEAPKG FPQAGPIDGK IASAGGKFGG ILDQQTADRW FKNTITGGEN 120
  121 TFTWKYTAPH LTSKWHYYIT KKGWNPNKAL TRADFEPIGT VQHDGSTASN HLTHKINVPT 180
  181 DRSGYYVILA VWDVADTANA FYNVIDVNLI NDIKPDTEAP SIPNGIQAQK VTANSIELAW 240
  241 NDSTDNVGVK GYQIFRNGEM IDTVPGTHFI DKKLQPSTEY SYTVKAIDAA GNASKESAKL 300
  301 TVKTAVEAPD TEAPTQPKGL HSMGTTSSSV DLMWSPSDDN IGVDHYDIYR EEEGSMKKIA 360
  361 TSNTTSYMDK NLLSNTTYKY VVKAVDVAGN ESVQSDIFTI TTKTESASYE EWNATKAYEK 420
  421 GDRVLYEGKV YEAVQSYKGN GDPNWIYALS LWKTV

Type	Start	End	Confidence
Signal Peptide	1	40	0.85
N-region	1	31
H-region	32	37
C-region	38	40
Cleavage Site	40	41
Non-Cytoplasmic	41	455	0.99