YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|42781823, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.84
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	17	0.95
Transmembrane Helix	18	37	0.92
Non-Cytoplasmic	38	62	0.93
Transmembrane Helix	63	87	0.84
Cytoplasmic	88	111	0.91
Transmembrane Helix	112	132	0.91
Non-Cytoplasmic	133	145	0.87
Transmembrane Helix	146	166	0.94
Cytoplasmic	167	173	0.85
Transmembrane Helix	174	195	0.89
Non-Cytoplasmic	196	211	0.90
Transmembrane Helix	212	234	0.92
Cytoplasmic	235	266	0.94
Transmembrane Helix	267	289	0.85
Non-Cytoplasmic	290	306	0.95
Transmembrane Helix	307	329	0.89
Cytoplasmic	330	363	0.96
Transmembrane Helix	364	386	0.90
Non-Cytoplasmic	387	395	0.72
Transmembrane Helix	396	414	0.91
Cytoplasmic	415	434	0.88

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFRTISNFMR VAEIRRKILF TLAMLIVFRI GTFIPVPHTN AEVLKVQDQA NVLGMLNVFG  60
   61 GGALQHFSIF AVGITPYITA SIIVQLLQMD VIPKFSEWAK QGEMGRKKSA QFTRYFTIIL 120
  121 AFIQAIGMSY GFNNIAGGQL ITDQSWTTYL FIATVLTAGT AFLLWLGEQI TANGVGNGIS 180
  181 MIIFAGLVAA IPNVANQIYL QQFQNAGDQL FMHIIKMVLI GLIILAIVVG VIYIQQAVRK 240
  241 IPIQYAKAVS GNNQYQGAKN THLPLKVNSA GVIPVIFASA FLMTPRTIAQ LFPDSSVSKW 300
  301 IVANLDFAHP FGMTLYVGLI VAFTYFYAFI QVNPEQMAEN LKKQNGYVPG IRPGKSTEQY 360
  361 VTKILYRLTF IGAIFLGAIS ILPLVFTKIA TLPPSAQIGG TSLLIIVGVA LETMKTLESQ 420
  421 LVKRHYKGFI KKAN