YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|42781761, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.62
Topology Confidence:	0.36
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKKIYIVTIL CIFIVIGTFV FHKVNERKYT KAINQSTHIK NIAHRGASAY APEHTIAAYT  60
   61 LGQQLKGDYI EIDLQMTKDG YLVAMHDETL NRTTNGTGLV KEHTLEEIKQ LNAGSTYNKK 120
  121 YPNLAKKEYE NAKVPTLEEV IEVFGHDANY YIETKSPDEY PEMEEKLLEI INHYEIQDKV 180
  181 IIQSFSEESL QKIHNLNVNI PLVQLLSYKK AVQLTELEIK KYKTYCIGLG MNYKYIDSAY 240
  241 VKRIKKHGLE VHPFTVDNEQ DMKKLLLWGV DGMFTNYPDR LHSLLKF

Type	Start	End	Confidence
Cytoplasmic	1	4	0.36
Transmembrane Helix	5	23	0.59
Non-Cytoplasmic	24	287	0.77