YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|42781738, gi|...
Protein type: Transmembrane
Type Confidence: 0.96
Topology Confidence: 0.84
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MHKLQTNKGA RYFMIAFIVL FLIMLLRFFY IQAVGVVQNV NVKDLANEQH NKNGVLEANR  60
   61 GTIYDQTGKV LVQDSTTYRV VVNLKGNDKV KNKDETAEQL ATALEIDKED VLKNFHEGRT 120
  121 QVEIGKVGRN LSREKKEQIK KLKIPGVSFM PEKARVYPNE DFASYILGFA RPDDKGNTEG 180
  181 KFGLEKSLDK YLRSTNGNIE YVGARGGIPL TNDIGKIEPA KHGNNVYLTL DKQINSFLEE 240
  241 AMNKAQEHYD PSMLVGIIAD PKTGKVLAMS SKPSFNPNKG DIEYFLNDPI ANAYEPGSTM 300
  301 KVFTLAAAIN EGVYNGKEYF QSGKYSVGSA DIKDHNGGFG WGSITFDEGF ERSSNVAFSI 360
  361 LEDQLLKPNK FKQYMNKFGF NQKTGIDLPG ESKNTLLLNT QIQQVTTSFG QGSTVTPIQL 420
  421 IQAATAIAND GKMMQPYIVD KVVNPTNKQV IMENQPKEVG NPIKKETADK VRDLMERVIT 480
  481 SSKGTGTMYK VDGYPIGGKT GTAQIPNPEN GRYMEGKENY IFSFLGMAPI DDPELIIYLA 540
  541 IKQPKLKGDE YGAQPLAEIF KPVVKNSLEY LKVKPYTEQQ MADATKKSQL KVQNYVNQSI 600
  601 DTVENNVKKE KLQPIILGEG KIKKQYPQSG EVMSEGDRIF LLGNNATMPN LQGWSMRDVM 660
  661 YFSKLLKLDL KTSGTGYVTN QSIEKGQAIQ EGDALELKLE PPLQPLAEAN TN

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle