YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|42737653, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.86
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNFVYINQNV LNNLLYILIS IFIFYFIYDS GRYLKKYKTL LITLCSSIPL ILCMRYPIYM  60
   61 DESCIHDLRQ IPVIIGTLYG GFPVGIILFT ILLITRFLFY GFNMLTVIVY GIMFIITAFA 120
  121 SAKFNTYNRK IKVAFSMFLT FFLAIFTTVI VLTLSNFEVN NLYIIYFIIL PTTLMLFIVY 180
  181 INEVIKDAVC MRSKLIKMEK MEIVSQLAAS ISHEVRNPLT VVKGFTQLLK TSNLTPESRD 240
  241 KYIDHXLEEL NRAQEIIDDY LTFAKPAPEK LDHISVEQEL NRVINMIVPL CNMNTVHITK 300
  301 DFSNATIVGN KQHFQQCFLN LIKNGIEAMP NGGTLNISSS ISNNKVIIRI EDSGIGMSQE 360
  361 QINRFGEPYF STKTKGTGLG TMVAVKIIET MQGNLKIRSV MNKGTTLTIT FPKCNTNASN 420
  421 NK

Type	Start	End	Confidence
Cytoplasmic	1	9	0.86
Transmembrane Helix	10	28	0.95
Non-Cytoplasmic	29	38	0.75
Transmembrane Helix	39	59	0.88
Cytoplasmic	60	72	0.89
Transmembrane Helix	73	94	0.91
Non-Cytoplasmic	95	101	0.64
Transmembrane Helix	102	122	0.89
Cytoplasmic	123	132	0.78
Transmembrane Helix	133	154	0.93
Non-Cytoplasmic	155	161	0.84
Transmembrane Helix	162	184	0.91
Cytoplasmic	185	422	0.97