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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|42737645, gi|...
Protein type: Transmembrane
Type Confidence: 0.90
Topology Confidence: 0.77
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKKQEKKSGR AVPMRLNILF LCVFILFSAM IIQLGKVQII DGETYKNEVE KRENATVSLS  60
   61 VPRGKIFDRE GNPVVDNKSL RTITYTKMKG VKSEEILKTA RQLADIIEIP QEDIDKLTET 120
  121 DKKDFWMQLN PKLTEKLVSK KEINKFRDKD ITGKNLDKKI EELKRKRVTD KDLQDLTDKD 180
  181 VKVLAIKSKM TSGYQMAPQI IKKDVSEKEF TIISEGLANL PGVDVSVDWE RVYVNDGYFR 240
  241 SVLGNVSNSD EGLPSEKLDY YLVRDYSRND RVGKSYIEQQ YEDVLHGTKK EVRSVADKQG 300
  301 TTIRTETISE GKSGKNLTLT IDMELQKKVE ESIEKILKAY KGSESMLDRA FVVMMNPKNG 360
  361 QVLSMAGKRL VEKDGKTEVE DYALGTMTSS YELGSTVKGA TVLTGFETKA ITPGTYFYDA 420
  421 PMKFKGTREK KSWKEFGNID DLRALQVSSN VYMFHTALKI AGVDYVKNSS LNIKQEHFDK 480
  481 MRYYFRQFGL GVPTGIDLPN ETAGQIGKKD NQPGFLLDYS IGQYDTYTPL QLVQYISTIA 540
  541 NGGYRMKPQI VQEVREQTSQ KDEIGKVVHA VEPIVLNKID MKEEYINQVK EGFRKVFQEG 600
  601 DGTGVRAFQK ASYKPAGKTG TAQTVYGGES DIGRNEKGER RECYNLTLAG YAPYDNPEVA 660
  661 FSVVVPWVMN DKSGINSDIG KEVLDAYFEL KNKRLTGETV KIDSSKED

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle