YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|42781558, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.65
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	30	0.89
Transmembrane Helix	31	50	0.95
Non-Cytoplasmic	51	70	0.84
Transmembrane Helix	71	93	0.89
Cytoplasmic	94	101	0.74
Transmembrane Helix	102	121	0.76
Non-Cytoplasmic	122	132	0.74
Transmembrane Helix	133	155	0.84
Cytoplasmic	156	175	0.71
Transmembrane Helix	176	198	0.85
Non-Cytoplasmic	199	217	0.62
Transmembrane Helix	218	241	0.82
Cytoplasmic	242	278	0.44
Transmembrane Helix	279	300	0.95
Non-Cytoplasmic	301	322	0.34
Transmembrane Helix	323	343	0.65
Cytoplasmic	344	344	0.19
Transmembrane Helix	345	366	0.68
Non-Cytoplasmic	367	384	0.68
Transmembrane Helix	385	406	0.91
Cytoplasmic	407	427	0.85

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNKFVTFLDK NLSGPMARLS EQRHLQAIRD GVISALPFII VGSFFLIVAF PPLPKDSFIS  60
   61 VWALKNQTSI LIPYRLTMFI MSLYIAFGIG YNLAKSYKLD ALSGAQLAVC SLLLTLTPEL 120
  121 IDKKGFMLPM TNLGGHGLFV TMIVSILSVE ILRFCKKKNV MIKMPEQVPP SVSRSFEALI 180
  181 PAAFVIIIMS LVTVVFSIDL HHVVDKLAAP LVKAGDSYFG VMIPVFLITF FWSFGIHGVS 240
  241 VVGTVARPLW EVYLGKNGEA VASGADQLPF ISPEPLYQWF IWIGGSGATL GLVLAMIVFG 300
  301 RSKYSKALSR TCIVPGIFNI NEPVIFGLPI VLNPILIIPF IITPLVTATV AYSATAMGFV 360
  361 TPTHIMPPWT LPAPIGAYLA TGGDWRAIVL VFINIAISFL IYLPFFKMYD KNMLEIEKNG 420
  421 EGESVNP