YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|42781474, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.55
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	13	0.55
Transmembrane Helix	14	35	0.89
Cytoplasmic	36	67	0.51
Transmembrane Helix	68	91	0.74
Non-Cytoplasmic	92	94	0.35
Transmembrane Helix	95	113	0.66
Cytoplasmic	114	145	0.89
Transmembrane Helix	146	166	0.90
Non-Cytoplasmic	167	180	0.87
Transmembrane Helix	181	202	0.91
Cytoplasmic	203	211	0.81
Transmembrane Helix	212	232	0.93
Non-Cytoplasmic	233	240	0.82
Transmembrane Helix	241	265	0.83
Cytoplasmic	266	304	0.85
Transmembrane Helix	305	327	0.88
Non-Cytoplasmic	328	344	0.85
Transmembrane Helix	345	370	0.83
Cytoplasmic	371	386	0.88
Transmembrane Helix	387	407	0.91
Non-Cytoplasmic	408	416	0.66
Transmembrane Helix	417	437	0.89
Cytoplasmic	438	455	0.87

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 METVSKVLEQ INHYVWGLPT LLLLVGTGII LTVRLKGLQF SKLLYAHKLA FKKSEDTSSS  60
   61 GDISHFQALM TAMAATIGMG NIAGVATAVT IGGPGAIFWM WITALFGMAT KYAEAILAVK 120
  121 YRVSNENGEY SGGPMYYLER GLGKKWLAVL FAIFGTTASF GIGNMVQSNS VAEAMRINFS 180
  181 FPPALTGIVM SFLIAIVILG GVKKIGKVTG YVVPIKAFFY IIAGLIIIFY HYDQIPEAFS 240
  241 LIFSGAFSGT AAAGGFIGAT VASAIQIGMA RGVFANEAGL GSAPIAAAAA KTDSPAKQAL 300
  301 VSMTGTFLDT FIVCTITGLV LITTGAWKSG KTGVEATTLA FQSVFGTAGS MILGIAIILF 360
  361 AYSTILGWSY YGEKCVAYLF GERAVKYYRA IFIVMIAIGA NLKLGIVWTF ADIANGLMAI 420
  421 PNLIGLIGLS GIVVAETNRF LQAEKLKENN KKQAS