YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|42737300, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.83
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTDFIQTFQE RKIELLTALS EHLQISLISL FFAVIIAVPL GILLTRKERM AEFIIGTSAV  60
   61 MQTVPSLALL GLLIPLVGIG KLPAIIALVV YALLPILRNT YTGIRELDES LIEAAKAMGM 120
  121 NSWRRLWKVE LPLALPIIMA GIRTAMVLIV GTATLAALIG AGGLGKLILL GIDRNDHGLI 180
  181 ILGAVPAALL ALFFDVVLRV LERPKRSSKR VILTICIVCI MVASPFLWNT EKKDIVIAGK 240
  241 LGSEPEILIQ MYKQLIEQDT DLHVQLKPGL GKTAFVFEAL KSGEVDIYPE FSGTALSTFV 300
  301 KEEPKSTNRD EVYEQARVGM EQKYNMVMLK PMEYNNTYAL AMPKKIADQN NISTISDLGK 360
  361 IAQNAKVGFT LEFADREDGY KGMRKLYNYK FSNVKTMEPK LRYSAIQSGD VNVIDAYSTD 420
  421 SELEQYGLKV LKDDKGLFPP YQGAPLLRKE TLQKYPELEK VLNKLSGKIT DEEMRKMNYE 480
  481 VNVNGKSSEE VAKQFLQKEN LLR

Type	Start	End	Confidence
Non-Cytoplasmic	1	22	0.89
Transmembrane Helix	23	44	0.92
Cytoplasmic	45	52	0.80
Transmembrane Helix	53	74	0.87
Non-Cytoplasmic	75	81	0.58
Transmembrane Helix	82	101	0.85
Cytoplasmic	102	143	0.85
Transmembrane Helix	144	164	0.83
Non-Cytoplasmic	165	177	0.78
Transmembrane Helix	178	198	0.95
Cytoplasmic	199	209	0.82
Transmembrane Helix	210	228	0.94
Non-Cytoplasmic	229	503	0.97