YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|42737127, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.81
Topology Confidence:	0.72
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNRGFFYVKF TSVRKLVLFI IATVLATFFL ISMMVTSMKE TKSTYLYNWL NELSMNGYMY  60
   61 VLGKENHYFT QEYRNLNQDF SISSFLFSMA TNIRFNDVRS FVGKELPGFG KYDTEIVIAG 120
  121 EGTNYSNLPI ESSVPLEEVV KERTGEGGQA QKPDTNKEKK QPAQTTGKRQ VAFIYHSHSW 180
  181 ESYLPLLNLT NDPNPNKATS SVTNISIVGD RFREQLANEG IGATNDKTDV GQKLISKGLN 240
  241 SNSSYKMSRE IVQEAMAGNK ELQYFFDLHR DSARKNVTTK IIGDKSYAKL AFVVGKGNKN 300
  301 YEKNLQLATA LHETISKKYP GVSRGVIQKG FQTGNGVYNQ DLSGQAILIE VGGVDNTEEE 360
  361 LNRSIDALAK AFGEYFWQAE KVNG

Type	Start	End	Confidence
Cytoplasmic	1	15	0.72
Transmembrane Helix	16	36	0.77
Non-Cytoplasmic	37	384	0.95