YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|42781103, gi\|...
Protein type:	Globular with Signal Peptide
Type Confidence:	0.87
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKRLKWGRLT VLLVIVLGIC WFLFQGTQKS ATSIEGQPLQ VAELPKTGLV EKVVPPKYIP  60
   61 PEIDAKAAMI IDASNGDIIY QHNENEAFAP ASMSKMMTAY LLLENVHNGK VRWEDPVKMS 120
  121 AKAAQTEGAR IPVQVNDTLT VKDLYHALMI ESANNSAVAL AEHMAKSEKD FVQLMNAKAK 180
  181 QLKMSEHAKF ANASGLQEPD GSETKMTAGD VANLAYHLIK DYPEILEVTH LRQSQLAFNN 240
  241 INVISTNDML NKNNKALYIE GIDGLKTGFT DSAGYCFTGT AKQGDTRIIT VVMGTKGKTK 300
  301 RFTETNKLMS YAFGLVN

Type	Start	End	Confidence
Signal Peptide	1	31	0.82
N-region	1	22
H-region	23	28
C-region	29	31
Cleavage Site	31	32
Non-Cytoplasmic	32	317	0.99