YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|42780902, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.88
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGHSHDHGHS KNKKALLFAF LLTTSFMIAE VIGGFVTNSL ALLSDAGHML SDAVSLALSL  60
   61 LAFKLGEKTA TAAKTYGYKR VEMLAALCNG VVLIVISIYI FIEAIRRFKE PVEIASNGML 120
  121 IIAVLGLLIN ILSAWILMRG GDVKGNLNLR SAFLHVLGDL LGSVGAIIAA LLIKFFGWTA 180
  181 ADAIASILVS ILVIISGWRV TRDTVHILME GAPQHINVEE VKSTLLNIPV VKEVHDLHIW 240
  241 SVTSDFQVLT CHLIIKGNET QSVLKEATDV LKEKFHVEHV TIQVEIDGEF NHSETTCKV

Type	Start	End	Confidence
Cytoplasmic	1	15	0.96
Transmembrane Helix	16	37	0.92
Non-Cytoplasmic	38	45	0.76
Transmembrane Helix	46	66	0.88
Cytoplasmic	67	82	0.92
Transmembrane Helix	83	102	0.95
Non-Cytoplasmic	103	117	0.76
Transmembrane Helix	118	138	0.92
Cytoplasmic	139	151	0.89
Transmembrane Helix	152	173	0.93
Non-Cytoplasmic	174	179	0.75
Transmembrane Helix	180	200	0.92
Cytoplasmic	201	299	0.99