YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|42736589, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.74
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVNLVWVAMA VIGIVYAMIN GTMEAINKAV FDGAKDAVTI CIGLISVLVF WLGLMKVAEE  60
   61 AGLLKKLVSL FMPIVKRLFP EIPKDHPSMG FILSNMMANF FGLGNAATPL GIKAMEQLKE 120
  121 LNGGKDSASR SMVTFLALNT SAITLIPTTV ISIRMTYESA NPTEIVGVTF IAQVLSMIGA 180
  181 IWIDRYFYRR RSRKGRKK

Type	Start	End	Confidence
Non-Cytoplasmic	1	4	0.74
Transmembrane Helix	5	26	0.85
Cytoplasmic	27	35	0.67
Transmembrane Helix	36	55	0.93
Non-Cytoplasmic	56	90	0.79
Transmembrane Helix	91	112	0.84
Cytoplasmic	113	131	0.92
Transmembrane Helix	132	153	0.91
Non-Cytoplasmic	154	164	0.83
Transmembrane Helix	165	188	0.87
Cytoplasmic	189	198	0.99