YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|42736478, gi\|...
Protein type:	Globular with Signal Peptide
Type Confidence:	0.98
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNKAKFGPML LALALFAVFL LIPTRFLLPL LSDEKVEQAA TSLKEEKIQS MILQQKMLAD  60
   61 SKYLPMYGSS EFARMDAYHP SNYFKVKPEG FTPFLLGRGG TQDLVHVLNF ASTMDQLKDK 120
  121 KMVFVLSPQW FVPQGIDETH FAPNFSKQQG YHFIFNDDVK PEMKKQIAKR LLNFEIVKKE 180
  181 TLLKISLEGI VYDDTKHKIK ALAAKPFAYI YRNILDRKDL FTAMFNIKPH KEKLDPSLKQ 240
  241 MSWEEARKHA DQTGAAESGS NNYGIEDGYF NSKIKKKLKQ REGYLKNDAY DQSPEYEDLQ 300
  301 IALDLLKQSG AKPLFISVPV KGPWYDYAGF PKERRELYYK KVHEQIEKAG YPIADFSNHE 360
  361 YDKYFLKDHM HLGWKGWVYI DEAIQQFYKA N

Type	Start	End	Confidence
Signal Peptide	1	32	0.93
N-region	1	23
H-region	24	29
C-region	30	32
Cleavage Site	32	33
Non-Cytoplasmic	33	391	0.99