YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|42780506, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.56
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	15	0.73
Transmembrane Helix	16	37	0.93
Non-Cytoplasmic	38	45	0.66
Transmembrane Helix	46	67	0.71
Cytoplasmic	68	74	0.44
Transmembrane Helix	75	100	0.88
Non-Cytoplasmic	101	130	0.52
Transmembrane Helix	131	154	0.89
Cytoplasmic	155	160	0.52
Transmembrane Helix	161	181	0.67
Non-Cytoplasmic	182	193	0.69
Transmembrane Helix	194	213	0.93
Cytoplasmic	214	230	0.72
Transmembrane Helix	231	254	0.89
Non-Cytoplasmic	255	298	0.64
Transmembrane Helix	299	333	0.72
Cytoplasmic	334	350	0.88
Transmembrane Helix	351	374	0.89
Non-Cytoplasmic	375	406	0.57
Transmembrane Helix	407	431	0.85
Cytoplasmic	432	449	0.56

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRDIKKFLQK LRPVQLIVLF YLLAVVVSVI LLSLPFVTKA DVKWTFIDAL FTSVSAVSVT  60
   61 GLSVVTISDT FTTAGIIILA LILQLGGLGI MALGTFVWII TGKKIGLQRR RLIMADHNQG 120
  121 NLSGLVELMR SILIVIISIE LIGAILLGTR FLLYFPTWQE AYFHGFFAAV SATTNGGFDL 180
  181 TGQSLIPYKK DYIVQMIHML LIILGAIGFP VLMEVKQFLS KRRQQLFRFS LFTKLTTTTF 240
  241 FALVVVGTIM IFLLERNHFL AGKSWHETVF YTLFQSVTTR SGGLATMDIL ELSQPTLLFM 300
  301 SILMFIGASP SSVGGGIRTT TFAVSILSLY TFARGGRTVR VFKRQLHEED VLKASVVMTM 360
  361 GILLCATALF ILSITENVPL MSLIVEVCSA FGTTGLSTGI TPDLTTVGKL VLIVLMFIGR 420
  421 VGILTFILAS GGREQPPRYK YPKERIIIG