YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|42780488, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.92
Topology Confidence:	0.53
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFTMVQKLWL TVVCAVFVTV SFLYFVSLYS YEKLYVDNLK DSLVMEGKRL SAQYDKREGI  60
   61 SIFEEKVRAF DQISSSDVLF VSNPRDLSAC LPFDVHHHSL ISEGDRQALL DGKTVTKIGY 120
  121 EEHFDRNIMG VVIPVLENKK LVGIVYSYIP LKSIKDLIYD MGLILAPLAL AITLLTIWIG 180
  181 RKIIIAITKP LSQMERVANH LATGDFSERI TISSEDEIGR LGKAFNKMAN SLETEDVKRK 240
  241 EFLANVSHEL RTPLSYIKGY SEAILDGVAK GPQQEKVTQL IHKEADRMQR LVHDLLDLAQ 300
  301 LEGEHFPLKK QPIVFSQLIE DVLDTYEIKF IEKKIRISTN LNPEIIVMID EDRMQQVLHN 360
  361 VLDNAIRYTN QNGDIIVTLR QIDDYCELNI KDTGIGIDTE HLENLGERFY RVDKARSRQH 420
  421 GGTGLGLAIV RQIVHIHDGQ WRIESEKGNG TTVSIKLKVQ DEESMF

Type	Start	End	Confidence
Cytoplasmic	1	7	0.55
Transmembrane Helix	8	28	0.86
Non-Cytoplasmic	29	156	0.65
Transmembrane Helix	157	180	0.76
Cytoplasmic	181	466	0.53