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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|42780470, gi|...
Protein type: Globular with Signal Peptide
Type Confidence: 0.99
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSKKPFKVLS SIALTAVLGL SFGAGTQSVY AETPVNKTAT SPVDDHLIPE ERLANALKKR  60
   61 GVIDSKASET ETKKAVEKYV ENKKGENPGK EVTNGDPLTK EASDFLKKVK DAKADTKEKL 120
  121 DKPATGTPTA TGPVKGGLNG KVPTSPAKQK AYNGDVRKDK VLVLLVEYAD FKHNNIDKEP 180
  181 GYMYSNDFNK EHYEKMLFGD EPFTLDDGSK IETFKQYYEE QSGGSYTVDG TVTKWLTVPG 240
  241 KAADYGADAA SGGHDNKGPK GPRDLVKDAL KAAVDSGIDL SEFDQFDQYD VNGDGNQNQP 300
  301 DGLIDHLMII HAGVGQEAGG GKLGDDAIWS HRWTVGPKPF PIEGTQAKVP YWGGKMAAFD 360
  361 YTIEPEDGAV GVFAHEYGHD LGLPDEYDTQ YSGQGEPIEA WSIMSGGSWA GKIAGTTPTS 420
  421 FSPQNKEFFQ KTIGGNWANI VEVDYEKLNK GIGLATYLDQ SVTKSDRPGM IRVNLPDKDV 480
  481 KTIEPAFGKK YYYSTKGDDL HTKMETPLFD LTNATTAKFD FKSLYEIEAE YDFLEVHAVT 540
  541 EDGKQTLIER LGEKANSGNA DSTNGKWIDK SYDLSQFKGK KVKLTFDYIT DGGLALNGFA 600
  601 LDNASLTVDG KVVFSDDAEG TPQFKLDGFV VSNGTEKKKH NYYVEWRNYA GADNALKFAR 660
  661 GPVFNTGMVV WYADSAYTDN WVGVHPGHGF LGVVDSHPEA IVGTLNGKPT VKSSTRFQIA 720
  721 DAAFSFDKTP AWKVVSPTRG TFTYDGLAGV PKFDDSKTYI NQQIPDAGRI LPKLGLKFEV 780
  781 VGQADDNSAG AVRLYR

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle