YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|42736295, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.68
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MMKDVQKLSP DLFQQANQNN VDNEVIARPS LTFWQDVRRR LFQHKGAMFG LVLLTLIILL  60
   61 AIFGPMVSKH SYKEQDLGRA KLPPKIPVIE NVHWLPFDGT DQYGVDQYEK RDIKEYFWFG 120
  121 TDDLGRDLWT RTWEGTRVSL YIALLAAAID LIIGVAYGGI SAFYGGRVDN IMQRIMEIIN 180
  181 GIPYLIIVIL MVIIMGSGIW SITLAMAITG WIGMSRIVRG QILKLKNQEY VLASRTLGAT 240
  241 NTQLIVKHLI PNVMGPIIVM TMFTIPTAVF GEAFLSFIGL GIQPPFASLG SLVNDGYKSI 300
  301 QTYPHMMFIP AVVISILILA FNLMADGLRD ALDPKMRK

Type	Start	End	Confidence
Cytoplasmic	1	45	0.68
Transmembrane Helix	46	67	0.88
Non-Cytoplasmic	68	138	0.69
Transmembrane Helix	139	164	0.86
Cytoplasmic	165	177	0.57
Transmembrane Helix	178	197	0.80
Non-Cytoplasmic	198	198	0.31
Transmembrane Helix	199	218	0.68
Cytoplasmic	219	256	0.68
Transmembrane Helix	257	282	0.78
Non-Cytoplasmic	283	305	0.76
Transmembrane Helix	306	325	0.94
Cytoplasmic	326	338	0.83