YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|42780344, gi\|...
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.99
Topology Confidence:	0.90
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRVGKIHTRK LFICFCLAVV LFVPIHTFAD EKREWRDEVI YSIMIDRFNN GEPKNDKQLE  60
   61 VGNLEGYQGG DIRGIIKRLD YIKEMGFTTV MLSPLFESVK YDGLDVRNFQ KVNEHFGTEN 120
  121 DVKELVQEAH AKGMKVVFQF PLGENEQQVI DSMKWWIKEV DLDASYVIHS EKKSPAFWDD 180
  181 VQKDMQVIKK DFRVMTKEDS EYNEKIVDAF SKADVSVKPL YDVSKKDGAA ATFLDNQDTK 240
  241 RFARIAKENM NYPPSRLKLA LTYLLTTPGI PNFYYGTEIA LDGGGTPDNR RLMDFKSDEK 300
  301 FMQHITKLGE LRQARPSLRR GTFELLYDKD GMSVLKRRYK DEVTLVAINN TKETQKVALP 360
  361 ASTIGEKQEL RGLLEDEIIR EENGKFYLVL KREESNVYKV NRETGVNWLF ISLIVGVNVL 420
  421 FIAFLIAVKK RRK

Type	Start	End	Confidence
Signal Peptide	1	29	0.99
N-region	1	20
H-region	21	26
C-region	27	29
Cleavage Site	29	30
Non-Cytoplasmic	30	404	0.99
Transmembrane Helix	405	428	0.90
Cytoplasmic	429	433	0.97