YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|42736147, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.87
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	28	0.87
Transmembrane Helix	29	45	0.92
Non-Cytoplasmic	46	55	0.76
Transmembrane Helix	56	79	0.87
Cytoplasmic	80	100	0.91
Transmembrane Helix	101	123	0.92
Non-Cytoplasmic	124	132	0.81
Transmembrane Helix	133	152	0.94
Cytoplasmic	153	168	0.85
Transmembrane Helix	169	184	0.93
Non-Cytoplasmic	185	188	0.85
Transmembrane Helix	189	210	0.90
Cytoplasmic	211	280	0.96
Transmembrane Helix	281	301	0.88
Non-Cytoplasmic	302	305	0.75
Transmembrane Helix	306	326	0.90
Cytoplasmic	327	346	0.96
Transmembrane Helix	347	369	0.92
Non-Cytoplasmic	370	374	0.82
Transmembrane Helix	375	396	0.92
Cytoplasmic	397	403	0.99

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNSTALWKER FRHFLQEVRT YSKYVFNDHL KFIFVFIIGA GAYYYQQWLQ TLTPSFPTAL  60
   61 VMAVLLGFVL TAGSIQTLLK EADLVYLLPV EQKLKPYFTK AFLFTFMIQL YIIAIVAAAL 120
  121 APLYFQQMKQ TGATYIWIVI AFVIVKAWNL FVAWEKSFLT DQNIQRADWF IRFILNALFV 180
  181 YFLVERTSVI FIAGIVLLMV LYLAIMYQMV KGKPLNWEYL ISEEGKKMML LYRIANMFVD 240
  241 VPALKERVAR RKWLDFILSM IGEKRTYLYL YTRTFLRSGN YFGLYVRLLV LGGVILYFIP 300
  301 FLYGRFIVSL IFLYLIGYQL LTLWKHHRMK IWLDLYPVGG EEKKKDFLTL LNAILITGSI 360
  361 IFTIIFLLAT KDFMMTGILL VVSIVFSIGF VYQYGAKRIE RLN