YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|42736040, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.60
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSYIPNMMTI ANFICGILAI YSVFFQDMYG AVMFIITGMV FDLFDGMVAR KLDAVSEIGG  60
   61 ELDSFADLVT FGVAPSILAY SVALKDLQSI GMICALAYSI CGMLRLARFN TQQSKLPTFI 120
  121 GMPIPFAAMC LLILCLLNKP VSVAFGTCVL AYLMVSKIKF PHFKKDISES LKSERWE

Type	Start	End	Confidence
Cytoplasmic	1	7	0.82
Transmembrane Helix	8	25	0.87
Non-Cytoplasmic	26	29	0.53
Transmembrane Helix	30	49	0.62
Cytoplasmic	50	63	0.49
Transmembrane Helix	64	83	0.60
Non-Cytoplasmic	84	88	0.63
Transmembrane Helix	89	107	0.92
Cytoplasmic	108	115	0.80
Transmembrane Helix	116	137	0.89
Non-Cytoplasmic	138	141	0.75
Transmembrane Helix	142	160	0.78
Cytoplasmic	161	177	0.81