YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|42779990, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.51
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	118	0.87
Transmembrane Helix	119	140	0.85
Non-Cytoplasmic	141	152	0.74
Transmembrane Helix	153	175	0.91
Cytoplasmic	176	180	0.77
Transmembrane Helix	181	203	0.86
Non-Cytoplasmic	204	209	0.69
Transmembrane Helix	210	230	0.87
Cytoplasmic	231	243	0.65
Transmembrane Helix	244	263	0.89
Non-Cytoplasmic	264	280	0.54
Transmembrane Helix	281	309	0.77
Cytoplasmic	310	321	0.56
Transmembrane Helix	322	345	0.79
Non-Cytoplasmic	346	354	0.47
Transmembrane Helix	355	377	0.73
Cytoplasmic	378	382	0.29
Transmembrane Helix	383	417	0.65
Non-Cytoplasmic	418	422	0.43
Transmembrane Helix	423	446	0.90
Cytoplasmic	447	454	0.51

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKKEERMARE ISEQLGGVKN IRGIAHCMTR LRLTLHDESK VNMDLLKKVE GVMGVIEDET  60
   61 LQVVVGPGTV NKVAAEMEGL TGLRIGEVAD HHLEDLGQEM KSEIKKKNNT PVKNFLRKIG 120
  121 SIFIPLIPGL VASGIINGVA NFAKNAGADP NATWLQMLLL IGGGIFTFLG ILVGWNTAKE 180
  181 FGGTPVLGAI AGILIFNPAM ATVKLFGEAL VPGRGGLFAV IFAAWLMVVV ERQVRKAVPN 240
  241 AVDIIVTPLI TVLVVSIVTM LAIQPVAGFL SEGITSGING ILNIGGAFAG AVLAGTFLPL 300
  301 VMVGLHHGLT PIHMEFINQT HVTPLLPVLA MAGAGQVGAA IAIFVKTKNK RLRNVIKGAL 360
  361 PVGFLGIGEP LLYGVTLPLG KPFLTACLGA AVGGAFQAVM KTAALGIGVS GLSLIPLIAD 420
  421 NKYLLYFLGL VVAYTFGFIF TYFFGFKEEM AENI