YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|42779954, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.68
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIFQFIGGLG IFLFGIKYMG DGLQQAAGDR LRDILDRFTT NPLMGVLAGM LVTVLIQSSS  60
   61 GTTALTVGLV SAGFMTLRQA IGVIMGANIG TTVTAFIIGI KIGEYALPIM AVGAILLFFF 120
  121 KNKKVHSLGQ VIFGFGMLFF GLELMSTGMK PLRSLESFQE LTVSMSDNPI LGIVVGTVFT 180
  181 LIVQSSSATI GILQELFGQG AIDLQAALPV LFGDNIGTTI TAVLAAIGTS IAARRAALVH 240
  241 VIFNIVGTLI FTILLIPFTN LIQYFQTSLN LNPEMTIAFA HGTFNVTNTI IQFPFIAVLA 300
  301 WIVTKIIRGE DAAIDFKPQH LNPIFIEQSP AIALTEAQKE IIRMAEFSLH GLKEANQFLN 360
  361 TQDKKHADMA TQLEGAINNL DKKITEYLVL LSEKPLSPTD SEKHSVLAGV VGDIERVGDH 420
  421 VENLVELVDF QISNRVSLSD EALTELNEML ELTISTLQDA VEALTNFDTE LAQTVIAKER 480
  481 KIDQMERVLR KRHVLRLNER SCSGDASIIF VDMVSNLERI GDHAVNIADG VLGEQGKVNL 540
  541 KQSL

Type	Start	End	Confidence
Cytoplasmic	1	37	0.68
Transmembrane Helix	38	59	0.81
Non-Cytoplasmic	60	74	0.51
Transmembrane Helix	75	98	0.74
Cytoplasmic	99	101	0.55
Transmembrane Helix	102	120	0.84
Non-Cytoplasmic	121	127	0.77
Transmembrane Helix	128	149	0.90
Cytoplasmic	150	169	0.87
Transmembrane Helix	170	192	0.89
Non-Cytoplasmic	193	209	0.82
Transmembrane Helix	210	231	0.86
Cytoplasmic	232	237	0.80
Transmembrane Helix	238	259	0.90
Non-Cytoplasmic	260	280	0.84
Transmembrane Helix	281	303	0.73
Cytoplasmic	304	544	0.85