YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|42735780, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.71
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNARTVNKVW TGIFYAVAAL VVALLVFLVF EILQKGWGFW DPNFLFGEPS NTRAGGGIGP  60
   61 QLFNSFYMLV ITLIISIPLG LGAGIYLAEY AKQGRFLNFV RLCIETMASL PSIVVGLFGL 120
  121 LVFVTMTGWG YTVMGGALAL TILNLPGLTR VCENAISEVP ANVKEASLGL GATKWQTITR 180
  181 IIIPSSLPQI ITGVILAAGR IFGEAAALIY TAGLTSPILN SAADFSSPAH PLNPFRPAET 240
  241 LAVHIWKLNS EGIIPDAKLI ATKSAAVLII MVLLFNVISR LVASILHKRF TGAKRKSKTT 300
  301 KKVKAA

Type	Start	End	Confidence
Cytoplasmic	1	10	0.92
Transmembrane Helix	11	33	0.92
Non-Cytoplasmic	34	65	0.96
Transmembrane Helix	66	88	0.94
Cytoplasmic	89	101	0.82
Transmembrane Helix	102	123	0.85
Non-Cytoplasmic	124	127	0.59
Transmembrane Helix	128	148	0.72
Cytoplasmic	149	189	0.67
Transmembrane Helix	190	212	0.71
Non-Cytoplasmic	213	263	0.82
Transmembrane Helix	264	286	0.84
Cytoplasmic	287	306	0.92