YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|42779719, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.46
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	20	0.46
Transmembrane Helix	21	46	0.79
Cytoplasmic	47	53	0.40
Transmembrane Helix	54	73	0.89
Non-Cytoplasmic	74	80	0.39
Transmembrane Helix	81	101	0.87
Cytoplasmic	102	117	0.52
Transmembrane Helix	118	139	0.79
Non-Cytoplasmic	140	145	0.58
Transmembrane Helix	146	168	0.91
Cytoplasmic	169	175	0.58
Transmembrane Helix	176	198	0.75
Non-Cytoplasmic	199	209	0.76
Transmembrane Helix	210	232	0.81
Cytoplasmic	233	266	0.92
Transmembrane Helix	267	286	0.91
Non-Cytoplasmic	287	291	0.73
Transmembrane Helix	292	313	0.89
Cytoplasmic	314	327	0.93
Transmembrane Helix	328	348	0.86
Non-Cytoplasmic	349	354	0.79
Transmembrane Helix	355	377	0.92
Cytoplasmic	378	388	0.80
Transmembrane Helix	389	409	0.66
Non-Cytoplasmic	410	417	0.62
Transmembrane Helix	418	441	0.81
Cytoplasmic	442	442	0.73

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEAVSFSGGN EVQRESFASK IMNVKIGVIP LPLYVVLAAI IYGASVYNKL PADMIGGFAV  60
   61 IMIMGIFLGD IGMRIPILKN IGGPAILSLF IPSLLVFFNW MNPASMEAAT MLMKKSNFLY 120
  121 LYISCLVVGS ILGMNRKVLV QGFVRMFIPL VVGTLASVAV GLLVGSLFGF EMKQTFFFII 180
  181 VPIVSGGIGE GILPLSLAYS DILNESSATF VSQLIPAAII GNMFAIVSAG YMKRLGEKKP 240
  241 ELSGNGVLVK TDNQAELLKE QNTEKPIDFS LMGAGLLIAC TFFIFGGFAS KFIGIPGAII 300
  301 MIFSAALVKY FKLMPAKMEQ GAFHLYKFIS KNLTWPLMVG LGLLYIPLKD VAAVLSVGYV 360
  361 VVCASVVLTM VASGFLVGKV MKMYPVESAI VTGCHSGLGG TGDVAILSAS NRMELMPFAQ 420
  421 ISTRLGGAAM VVTATILLKM FS