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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|42735604, gi|...
Protein type: Transmembrane with Signal Peptide
Type Confidence: 0.94
Topology Confidence: 0.74
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKNNKRKHIN AMLIAATLSL PFATYSTPAL AAVVSEVNKA GHILKDGTYD VVLKAYNEKT  60
   61 NEESRATTYI KEPKVTIENG KKIVTATLND SDFFQYLKVE DSQNPGTLHD VKVLSEDKRK 120
  121 NGTKVIQFEI GELGKRYKMQ MHIFIPSMGY DEKYQVQFEV NTVHSENNTI EESKEKKEEQ 180
  181 QQVKNIISDN KLQQYINKSV LQRADINAPI TEEDAAQIKE LKVYLGKGIE SLEGLQYMEN 240
  241 LEAFELHESN VKDISPISSL KKLKTMKLYL NPIENIAPIS QLEKLQFLTL RDNKISDLTP 300
  301 LSQLKKVKVL DLIGNEITDI KPLFSMDSVT KLYLSNNKIS DLTDIEKLDD LRLLWIGNNY 360
  361 IDNLTEIGKL KNLVELEVAN AEIRDLTPLA KMQQLQSLDL EQNYISDISP ISKLNNLYAL 420
  421 NLIANEIRDI RPVKELGKRV PIKLQRQKIF LSDGVVNEDI KIPIYDSNGE IVQNIKWQGE 480
  481 EGTLNNGSVK WNSTGEKVYE FKLETDSAES QILFNGTVYQ NIVEKHEDIN IIQDKNLQKF 540
  541 INKNGLGRAN LESSITKEDL LQIKSLKIVD GKNQGITDIS GLEYMTNIEE LVLDNIELKN 600
  601 VDFISNLRSL KAVKLTSNQL ENIEPLSKLD KLEKIDISDN NVKNIRPLFT LNAMKNLNVS 660
  661 NNKLNDASLQ EIQQLKNLEV LKLNHNEISN VEAISEISML NELELVGNKV VDITPLSKLK 720
  721 NLQWLDLSDN KIQDISIFAS MLDLISLKLP GNEIRDIRPI IQLSQWSTID IRRQKITLDD 780
  781 VQMNQAVKIP VHDVEGVPLE DITLKSEGGI INEEGTITWS TPGEKVYEFT FDGNNYFGLG 840
  841 IWFSGEVIQN VVNKTESKEE TPKPVVEEKP KEETTKPVVE EKPKEETSKP VVEEKPKEET 900
  901 SKPVVEEKPK EETTKPVMEE KPKEETTKPV VEEKPKEETT KPVVEEKPKE ETSKPVVEEK 960
  961 PKEETTKPAV EEKPKEETSK PVVEEKPKEE TTKPAVEEKS KEETPKLVME EKSKEGTSKP1020
 1021 VVEERRKEGN KLAKENESNK QVDNKKEESK NTLAATGGQE SNVSLLSGLA FVLSALSMFV1080
 1081 FRKKLFKK

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle