YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|42779287, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.76
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGAYEINDQL LTNEEKKELT INKDQQKISR KKEVFRKFIS NPIAVLGTVT LLLIIIFSLI  60
   61 GESLTSFTAS EQVKEATNLP PSSEHWFGTD DLGRDIWART WAGGKISLTV GLVAAALDIG 120
  121 LGVLIGGFSG YVRGRNRLGT LIDEWIIRGI EVLYGIPYLL IVILLLIVMK PGLFTIIIAL 180
  181 ALTGWIGMAR LVRAQVLSLK QREFVIAAER LGTSHMKIIY GHLIPNLTGI IIVNLSFTIP 240
  241 AAIFSESFLS FIGLGVQSPA ASWGTMTNDA LGTLLSGEWW QLFFPAIMIA LIMFAFNAIG 300
  301 DGLQDAIDPK IVKQNRKEKK HGTALIFRKR NVSR

Type	Start	End	Confidence
Cytoplasmic	1	37	0.99
Transmembrane Helix	38	60	0.93
Non-Cytoplasmic	61	106	0.97
Transmembrane Helix	107	132	0.86
Cytoplasmic	133	144	0.96
Transmembrane Helix	145	168	0.87
Non-Cytoplasmic	169	172	0.83
Transmembrane Helix	173	192	0.93
Cytoplasmic	193	219	0.90
Transmembrane Helix	220	244	0.81
Non-Cytoplasmic	245	278	0.73
Transmembrane Helix	279	300	0.88
Cytoplasmic	301	334	0.76