YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|32409469, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.44
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	290	0.56
Transmembrane Helix	291	316	0.85
Cytoplasmic	317	429	0.71
Transmembrane Helix	430	463	0.77
Non-Cytoplasmic	464	488	0.49
Transmembrane Helix	489	510	0.44
Cytoplasmic	511	521	0.84
Transmembrane Helix	522	543	0.91
Non-Cytoplasmic	544	552	0.88
Transmembrane Helix	553	575	0.88
Cytoplasmic	576	586	0.78
Transmembrane Helix	587	610	0.86
Non-Cytoplasmic	611	620	0.84
Transmembrane Helix	621	643	0.89
Cytoplasmic	644	654	0.84
Transmembrane Helix	655	675	0.90
Non-Cytoplasmic	676	724	0.95
Transmembrane Helix	725	745	0.93
Cytoplasmic	746	949	0.99
Transmembrane Helix	950	968	0.85
Non-Cytoplasmic	969	984	0.80
Transmembrane Helix	985	1007	0.75
Cytoplasmic	1008	1019	0.71
Transmembrane Helix	1020	1040	0.92
Non-Cytoplasmic	1041	1056	0.84
Transmembrane Helix	1057	1077	0.91
Cytoplasmic	1078	1086	0.72
Transmembrane Helix	1087	1106	0.90
Non-Cytoplasmic	1107	1146	0.88

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGPPSQAGDE DRPDPSPTNT RRNSRLDLIN TTETRHDDAG MNPPDTSYHS TDIVRRLPDP  60
   61 MGPAGAANMA NAEGAPSITA SERERTVSRA SQTGIPRSPM VGPDRGRPRP RKPPMARRTS 120
  121 SNAQAPHRGE VFSVDDDITE VEADAAERQK SYSGSTARRR NLLPAPLSRV HSILDEDGAN 180
  181 DSRDRDTPDV IEEVDTPGQE GDLNLPPPAE EDSAEGETPV EDDDGDISDA ESFTLKDRQQ 240
  241 AINETHPFGI RLWKPALYKK HRSVQKTAEG DIHSSPGGHV SRWLLFFNIM WTLAFGWWMS 300
  301 LIAYTGAIVC FVFAAAPSGR EYGRVLWGLA GYLFYPFGKF IRLEQQDGYL DEDQDEGRSI 360
  361 SEYEQWQSGD LEDGRLFFGP ERDRSIIGHS RRSLDSEPDE TESLLGRGRG HGSDSDLPRM 420
  421 KRRLFGRGQW NVGRVIYFLF FYTMIMPSLF IVSAICWFLV FWIPMGKVTM LLIDHLRRHP 480
  481 LALWFESDIS TARASTTPHS SILICTYRAV GIKYWKYTID GTNIFLVNMM AIVIFVIFDW 540
  541 IVLEGVLEIH NFFTSPAFLF VTGLLSIIPL AYFIGQAVAS ISAQSSMGFG AAINAFFSTI 600
  601 VEVFLYCVAL QQGKAQLVEG SIMGSIFAGI LFLPGISMCC GAIKRKTQRF NAKSAGVTST 660
  661 MLLFAVIGAF GPTLFYQIYG THELTCQDCL YFDHPRGSVR DCRRCYFSQT PAMNDRFYLE 720
  721 AVRPYCYIAA GMLFLSYIIG LWFTLRTHAA VIWNTEADEK KHEENTARNS ARPSAVHTSL 780
  781 GDTTGADVRD SHLYKRILGQ SLRQVGHQGP SDEPQRPGSS VSGGAKANGT PHMVPPKSTG 840
  841 YGATDSQHSS TILNIPGFSD AENNNLVHQV AEIAATAATV AARNYSSQRR ASHLGGSSST 900
  901 GQQQSAPGSR RGLIRTATFP DADEAGGEST TAAHSGGGHD APNWSRLKSS IILMGATVLY 960
  961 AVIAEILVDT VDVVLESFEI DEKFLGITLF ALVPNTTEFL NAISFAMNGN IALSMEIGSA1020
 1021 YALQVCLLQI PALVLFSAIY PPDVPVADMA RYTFSLLFPQ WDMVTVILCV FLLSYMYGEG1080
 1081 KSNYFKGSIL LLSYLVVVIG YYFSGYSTGL EKSNSGISRF DTLGDDGQYM SYGFKTVGRG1140
 1141 TSGVAY