YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|32409305, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.75
Topology Confidence:	0.64
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSTFETLQER LTALQETTGQ LKDLIERLAT LKFEPGSVPL SNSISSLANT GADGTTNSEA  60
   61 ADLSAEISQV LREEEEDLEL LQEEIIDLRS GRPGSEAEHQ KTRLKEGAQR LAAELKGCRT 120
  121 SFRKAQLAAR RNLETAQRLE RQLLLASYVA VAANLAASDR GSGASTPVST AAAPSGGAQP 180
  181 TSSTTSPPPL STPAAAASSD APPLDPRQAL FGNRRRKQHQ TNLPPSHDSE VVSASSTVTD 240
  241 ALRRTHALIA SEVAKSAFAS QTLAESTAAL KELQRSYEGI DSLLSRSRDL VSTLLQSQKS 300
  301 DTWYLRTSLY MLLCTLGWLV FRRWLYGPLW WTLWLPLRMV WKGGRVAYGV STHHGGHGAG 360
  361 ETRTGEGARM EVSVGNEGMG GRRVVVGMAE EGAVPTLQVQ VGGGGGGGEK VKKRDNDNDV 420
  421 DSESMAEKVG RIIEENLPPL EEEKDETHPI VVEDPELEQG WIGQERIFTG EQGEKGEEEK 480
  481 EEEEEVVQRN PKKRMWEEPV VNSPLREEL

Type	Start	End	Confidence
Non-Cytoplasmic	1	302	0.89
Transmembrane Helix	303	321	0.70
Cytoplasmic	322	509	0.64