YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	GWT1_NEUCR
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.59
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	27	0.59
Transmembrane Helix	28	47	0.65
Cytoplasmic	48	57	0.73
Transmembrane Helix	58	77	0.84
Non-Cytoplasmic	78	83	0.62
Transmembrane Helix	84	103	0.91
Cytoplasmic	104	138	0.95
Transmembrane Helix	139	159	0.89
Non-Cytoplasmic	160	172	0.82
Transmembrane Helix	173	194	0.87
Cytoplasmic	195	210	0.97
Transmembrane Helix	211	230	0.88
Non-Cytoplasmic	231	242	0.79
Transmembrane Helix	243	262	0.91
Cytoplasmic	263	271	0.64
Transmembrane Helix	272	287	0.92
Non-Cytoplasmic	288	313	0.79
Transmembrane Helix	314	335	0.91
Cytoplasmic	336	355	0.92
Transmembrane Helix	356	376	0.93
Non-Cytoplasmic	377	395	0.91
Transmembrane Helix	396	418	0.85
Cytoplasmic	419	447	0.87
Transmembrane Helix	448	467	0.89
Non-Cytoplasmic	468	474	0.74
Transmembrane Helix	475	495	0.91
Cytoplasmic	496	504	0.80

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAIDSTTAQS YKQLKEDFVS NLSGGSVSEI AQVCAVAPVV SLVWSVLQAR QSFFRPYTPL  60
   61 GYAIDFLLNV GALLLSVTLY SSAPLLLNLL LLTVAAFVYL VPAHTRKKKP QLPPNAQSKK 120
  121 SSSEQPLGVL STKPFLTNYR GNMLIVTCIC ILAVDFRLFP RRFAKVETWG TSLMDMGVGS 180
  181 FVFSAGVVAS RPVLKERAEG KAAPLSTRLK TSLRHSLPLL VLGFIRLLSV KGLDYAEHVT 240
  241 EYGVHWNFFF TLGFLPPFVA LFQSALKVLP SYAGLALLLG VVYQVLLETT SLKAYILTGP 300
  301 RNDLLSMNRE GVFSFFGYLA IFLAGQDTGM LVLPRSLSRS ISGSNNKTSG TVQRRSLLLN 360
  361 MAGWSLVWIA LYFFATDYKY GFGLSVSRRM ANLPYMLWVA ASNAVLLLAF YLVDALLFPS 420
  421 FYSAQDVKTE KELYDMATSK VLRAYNRNGL AIFLLANLFT GLVNMTVPTL DVGRVATVGI 480
  481 LVAYMGALTA VAVGLDEYNV TIKL