YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|32409059, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.51
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAQHGTTLLP RMDMGDGNMN GPACKISMLW NWYTIDACFL HQSWHITTRG AFAATCIGIM  60
   61 LMVVMLEFLR RLAKEYDEWI VRDFRRRSAL ISEQQRCLRQ QPRQRQASPS SCGTADAAAA 120
  121 KTAGLLACTT SAVTTTGKRR GGYMGSSRTT TTTTTTTTLK FRASPLQQLI RALIHAVMFG 180
  181 LGYLIMLLAM YYNGYVLISI WIGALLGKFL CDWLTVKFEI RGGDEEEEDM MMSDGFTDEV 240
  241 PRLQGVEDAT VCCG

Type	Start	End	Confidence
Non-Cytoplasmic	1	49	0.51
Transmembrane Helix	50	69	0.90
Cytoplasmic	70	168	0.96
Transmembrane Helix	169	190	0.89
Non-Cytoplasmic	191	196	0.62
Transmembrane Helix	197	216	0.80
Cytoplasmic	217	254	0.90