YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|42528218, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.64
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MELKENKFEQ IKYLLSEKRY IEVQRTLAEL NEVDIAEFLE TESAQNAILM FRMLPKSMAA  60
   61 EVFTLLPTEQ QSRFIAAATD KELVSILDEI FLDDMVDIVE EMPANVVKKI LKNTGSEERM 120
  121 LINQFLKYPK DSAGSLMTIE YVDLKKTMTV KQALDYIRKI GLESETIYTC YVTDKNRVLE 180
  181 GFISLKELVL ADEDKKIEQI FNREYICVNT HDDQEKVAFT FKKYGFLALP VVDNENRLIG 240
  241 IITVDDIMDV MEQEATEDFQ RMAAMQPNEE TYLETGIFKL AKHRIGWLLL LMVSETFTGT 300
  301 IIERYTHLVA SMTILTAFIP MLMDTGGNSG SQSSTLIIRG LATGEIDLKD WKKVFFKELG 360
  361 IAVLVGFTLG LFSFLKSVFL GGRNPMIALT VGATLVATVT VAKITGGLLP IMAKKLKLDP 420
  421 AIMAGPLITT IVDTVSLIIY FKIASVLCAG MF

Type	Start	End	Confidence
Cytoplasmic	1	284	0.79
Transmembrane Helix	285	302	0.64
Non-Cytoplasmic	303	307	0.48
Transmembrane Helix	308	328	0.65
Cytoplasmic	329	358	0.71
Transmembrane Helix	359	379	0.90
Non-Cytoplasmic	380	385	0.77
Transmembrane Helix	386	407	0.90
Cytoplasmic	408	421	0.73
Transmembrane Helix	422	444	0.83
Non-Cytoplasmic	445	452	0.74