YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|42528206, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.82
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	6	0.84
Transmembrane Helix	7	29	0.85
Non-Cytoplasmic	30	34	0.67
Transmembrane Helix	35	54	0.84
Cytoplasmic	55	76	0.91
Transmembrane Helix	77	98	0.93
Non-Cytoplasmic	99	105	0.92
Transmembrane Helix	106	128	0.91
Cytoplasmic	129	148	0.85
Transmembrane Helix	149	167	0.96
Non-Cytoplasmic	168	174	0.81
Transmembrane Helix	175	196	0.92
Cytoplasmic	197	231	0.95
Transmembrane Helix	232	254	0.93
Non-Cytoplasmic	255	261	0.84
Transmembrane Helix	262	281	0.94
Cytoplasmic	282	291	0.83
Transmembrane Helix	292	312	0.93
Non-Cytoplasmic	313	317	0.87
Transmembrane Helix	318	338	0.87
Cytoplasmic	339	370	0.87
Transmembrane Helix	371	390	0.91
Non-Cytoplasmic	391	559	0.89
Transmembrane Helix	560	580	0.86
Cytoplasmic	581	625	0.82

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTWRTYLAYG AADLYGGGCF FIVTTFAMYY LVNVIGLHPV LAGLIPAIGK FWDAVSDPMM  60
   61 GYIADNTPQN RFGKRRVWFL VSIIPIALSF IIIWVPTGIE SQAGKFIFYT VAYIIFFTVS 120
  121 TVSYIPYAAL SAEITKDFSE RNKLNGSRLM FSFIATLLGG LLAQPIIDAF HGSMMGYFVM 180
  181 SIVFALIFAL PWIPLYFETW ELPEEKSQKK SDAKFIKNFL SLFKSRSCRI HIAMYVCSYG 240
  241 ALDIVMSLVL FYIVDYLNRG SVFVIAQGAL LLTMMATLPI HNRIINKKGH KPVYVAALII 300
  301 FAVSIVLMSF HTPQTNPAFL ILNMVLMGIG ISANNLIPHQ LLPFLADIDK LMSGENRAGT 360
  361 YSAAMTLTRK LFLGLVIMTT IGFVLSGIGY KNPVPSVLTQ KQFEEAQNLA VKNNENFENI 420
  421 NKYYSLREDG NFHLKYMSRS TDEIITSAYK KAKKNQHANP LFSFFEGKDN FAEIPQDVFE 480
  481 NLLSSFDKKD FNEIDKKFLV ESSYTKSGEV YKKIEPQDLY TKDDLYDLKE LLDKIDFKYS 540
  541 GIGQVQKPQQ KESTLKGVKI SFIIMPLFMI LFGIFFGLKF NVSPENHKII LDELNRLEAG 600
  601 GKKEDADEKT KKICELLIGE PYGRT