YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|42526188, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.88
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	6	0.89
Transmembrane Helix	7	29	0.88
Non-Cytoplasmic	30	34	0.87
Transmembrane Helix	35	57	0.91
Cytoplasmic	58	69	0.96
Transmembrane Helix	70	92	0.90
Non-Cytoplasmic	93	99	0.78
Transmembrane Helix	100	119	0.94
Cytoplasmic	120	124	0.87
Transmembrane Helix	125	143	0.94
Non-Cytoplasmic	144	150	0.72
Transmembrane Helix	151	169	0.93
Cytoplasmic	170	182	0.86
Transmembrane Helix	183	203	0.93
Non-Cytoplasmic	204	210	0.84
Transmembrane Helix	211	231	0.95
Cytoplasmic	232	241	0.87
Transmembrane Helix	242	261	0.94
Non-Cytoplasmic	262	268	0.85
Transmembrane Helix	269	289	0.95
Cytoplasmic	290	347	0.99

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNKNIIAIIY AVAAAAFYAL NVPCSKILLQ NISPVFMAGL LYIGAGLGVG ILYLFNFKKE  60
   61 QKSERLDKNY LPYTIGMIFL DIVAPILLML GVKYGTSSNA SLLGNFEIVA TALIALIIFK 120
  121 EKVTWRLWIA IFFITASSII LSFENIEGLN FSIGSLFVLG ATICWGLENN CTRRMSDKST 180
  181 YQIVTIKGLC SGFGSIIVAF VSGETDFTLK YIPFALLLGF VSYGLSIFTY IRAQKYLGAA 240
  241 KTSAYYSIAP FIGTFLAFVL LKEKISTKYI SALFVMIIGT AFAVYDTLIR KHLHGHRHTF 300
  301 THTHNGITHT HTISHSHLHN HFISDSKHGH HHSIEELENE LKNEIGK