YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|85111887
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.64
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	298	0.64
Transmembrane Helix	299	320	0.88
Non-Cytoplasmic	321	329	0.78
Transmembrane Helix	330	350	0.90
Cytoplasmic	351	361	0.81
Transmembrane Helix	362	384	0.90
Non-Cytoplasmic	385	391	0.82
Transmembrane Helix	392	414	0.90
Cytoplasmic	415	434	0.85
Transmembrane Helix	435	455	0.85
Non-Cytoplasmic	456	469	0.80
Transmembrane Helix	470	493	0.80
Cytoplasmic	494	513	0.81
Transmembrane Helix	514	535	0.89
Non-Cytoplasmic	536	550	0.89
Transmembrane Helix	551	577	0.74
Cytoplasmic	578	586	0.75
Transmembrane Helix	587	609	0.84
Non-Cytoplasmic	610	614	0.75
Transmembrane Helix	615	635	0.92
Cytoplasmic	636	666	0.93

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASPPIPIQS SGRRRGSAAR RESRDFHDTI FDTVSLLGTS YLSTAPIAQE ILARDLAELE  60
   61 DDEQHERDEE CRSDDEEDVE PPIDVGSLPV GHLVSRPGGV AYGTLRPIIA SEMQGSPIVC 120
  121 ETDVVESRAA ERSLLRDNHL LPPKHPRSPD DPLWKKMYRR LFSTKVPVSD KAFEETPLLQ 180
  181 EYPLPPSPTI SEEINQWERA VAQNMLKTTW QREAQTITKY SRSLIVTFLL HYSVTVTSVF 240
  241 TVGRIGRLEL GAVSLATMTA NITCYAPVQG LSTCLDTLCA QAFGSGHKKL VGLQLQRMTY 300
  301 LLWLLLLPIA TLWWFSGGVL HRIIPDPDTA ALAGMYLRVL ILGTPGVAAF ESGKRFVQAQ 360
  361 GLFHATTFVL LIGAPLNVLA NWFFVWRMGW GFTGAASAVV FTQNLLPFLL FLYVRFIQGM 420
  421 ECWNGLSRHA FSNWGPMIRL ALPGMIMVEA QYFAFEVLTL AASQFGSAHL AAQSVLVTVT 480
  481 STTFNIPFPL SIAASTRVAN LIGAKLSDAA RTSAKVALCC GIVVGLFNMT LLSSLRFKIP 540
  541 YLFTKDEEVA AIVSKVLPIC AVLQLVDALA AISHGLLRGI GRQGIGGFTN LFSYYLIALP 600
  601 ISFSTGWALG WQLQGLWFGV AIGLAVVSTV ELWYLHQADW EHAVQEAENR LRSDEACHQS 660
  661 QRRESK