YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|85074755
Protein type:	Globular with Signal Peptide
Type Confidence:	0.96
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSSFLSNSSN QSKLQLATVA LASAAVTAGA IYGYQQSRHG ERLNRLKKSI PNPAGDAEPE  60
   61 LQRVTRQGPV PKLDKEDEHN QALAHRAQNG DFDDELILEQ LARNRVFLGD EGLAKLRNSF 120
  121 VVIVGCGGVG SHAATTLARS GVSKLRLIDF DQVTLSSLNR HAVATLADVG IPKVQCLQRR 180
  181 LIAITPWVRF DLRLQKFDGS VAPELLGAWE KDGQMPDFVI DAIDNIDSKV ELLKYCYDNN 240
  241 LPVISSMGAG TKSDPTRIMV GDIGTSTDDG LSRATRRRLK LLGVTSGIPV VYSTEKMGEG 300
  301 KAALLPLPEE EFKKGDVGDL AALPDFRVRI LPVLGTMPAV FGYTVANHVI LKISGYPLDY 360
  361 IPQKGRDKMY DGIQAFVQAS EEKIIRAVTG GPRELCIGLK VPIQPCEVSF LVEDIYKAKS 420
  421 AVTGLPTKLV LIRWQKPTRD ILIRIGEGAD EQKSSDLKLS ELVCMTKDEA TRHQREVLLG 480
  481 EKTLEELYDA EIIEKVAKRQ EEIKLYEKYR

Type	Start	End	Confidence
Signal Peptide	1	30	0.95
N-region	1	21
H-region	22	27
C-region	28	30
Cleavage Site	30	31
Non-Cytoplasmic	31	510	0.99