YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|85105213
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.75
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSRSGYDAVV DVDDEGDLGH TDLQEDLEFH QSNFSESSPL GRNGTKSTQH TNTTSTSSLG  60
   61 GGLLPAPVTA ARTSSNSGGG SSKRFLWTLS FYAQFFDVDT SSVLQRCWAA LYPRANFLDV 120
  121 LEGNPDLYGP FWIATTVVLI LFLGGTISDY LAQTGKEAFA YDFRLLSGAA GLIYGYTFVL 180
  181 PVALYLALRY FGSESANLLE CWALYGYSNL IWIPVALISW SPITILNWVF VGVGFGVSVA 240
  241 FLLRNLYPVL SATDRQTSKV LLFVVVALHF GLALAIKVLF FAHGSPALKD GPKGAAPGGG 300
  301 DAKPADPATM MMMF

Type	Start	End	Confidence
Cytoplasmic	1	127	0.82
Transmembrane Helix	128	152	0.83
Non-Cytoplasmic	153	164	0.69
Transmembrane Helix	165	188	0.85
Cytoplasmic	189	200	0.54
Transmembrane Helix	201	220	0.75
Non-Cytoplasmic	221	224	0.60
Transmembrane Helix	225	247	0.86
Cytoplasmic	248	259	0.81
Transmembrane Helix	260	281	0.93
Non-Cytoplasmic	282	314	0.88