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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: LONM_NEUCR
Protein type: Globular with Signal Peptide
Type Confidence: 0.87
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLSRQRIPRI LASRTSLAHS IRSFTSTTSS IRPVAAAGQH AVTRPRHERP TNLSSFSTYT  60
   61 ALGKKNDKGF FDNSIEPLSE EERKANVEHA EAEAKEAESK QAKSKSSTSD APPPAPEDGK 120
  121 AGAAGGSSAG SGSGADGGSG DGGKRGRKPG DKALAKPVVP EIYPQVMAIP IAKRPLFPGF 180
  181 YKAITIKDPN VAAAITEMIK RGQPYVGAFL FKDENADDDV IRNRDDVYDV GVFAQITSAF 240
  241 PMNNQNGEGA SLTAILYPHR RIKLSELIPP GSPEAASIDG AKEGAAPEPV PEPIPKVTDE 300
  301 SEQKGDVVAS FEESAVTPRP EPSQKPYEPT SFLKKYPVSL VNVENLTEEP YDPKSQVIRA 360
  361 VTNEIVNVFK EVASMNSLFR DQISTFSMSQ STGNVMAEPA KLADFAAAVS AGEPAELQEV 420
  421 LSSLNVEERM HKALLVLKKE HVNAQLQSKI TKDVEQKITK RQREYWLMEQ MKGIRRELGI 480
  481 ESDGKDKLVE KFKELADKLA MPEAVRKVFD DELNKLAHLE PAASEFNVTR NYLDWLTNIP 540
  541 WGQSSAENFD ILNAVKVLDE DHYGLKDVKD RILEFIAVGK LRGTVEGKIL CFVGPPGVGK 600
  601 TSIGKSIARA LGRQYYRFSV GGLTDVAEIK GHRRTYVGAL PGRVIQALKK CKTENPLILI 660
  661 DEIDKIGRGY QGDPSSALLE LLDPEQNGSF LDHYLDVPVD LSKVLFVCTA NLTDTIPRPL 720
  721 LDRMEVIRLS GYVADEKMAI AEKYLAPQAQ EMAGLKGVDV QLTKDAIEEL NKSYCRESGV 780
  781 RNLKKKIEQV YRKSALKIVQ DLGEQALPES EALTEEGKAA QEETEKKKSE EAASGETSSP 840
  841 KAATEASEKE TTEKPRVAMK IPEGVHVVIN KDNLKDYVGP PIFTSDRLYD VTPPGVTMGL 900
  901 AWTSMGGAAM YVESILQSAL TSKSAPSLEI TGNLKTVMKE SSAIAYSYAK AVMAKDFPKN 960
  961 RFFDKAKIHV HVPEGAVQKD GPSAGITMTT SLLSLALDTP IDPQIAMTGE LTLTGKVLRI1020
 1021 GGLREKTVAA RRAGCKMVVF PEDNMSDWLE LPENVKEGIE GRPVRWYSEV FDLIFPKLDR1080
 1081 EKANKSRIIE DDKSEKEESK KKNDDDE

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle