YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|85104874
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.52
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASTSATDIP AEVQAVNVPD GTTDFIPLRG KKYDLKKPHI TELPITWGNW YKHVNWLNTT  60
   61 FIIFVPLAGL ISAYWIPAQT KTILFSIAYY YFAGLGITAG YHRLWAHTSY KATLPLKIWL 120
  121 AAGGAAAVEG SARWWSRDHR AHHRYTDTDK DPYSVRKGLL YSHIGWMVMK QNPKRIGRTD 180
  181 ITDLNEDPVV VWQHKHYIKC VIVMALIVPT LICGLGWGDY AGGFIYGGIL RIFFIQQATF 240
  241 CVNSLAHWLG DQPFDDRNSP RDHVITALVT LGEGYHNFHH EFPSDFRNAI EWWQYDPTKW 300
  301 CIWVWKQLGL AYDLKKFPHN EIEKGRLQQQ QKKLDQKRAT LDWGIPLENL PVVSWDDFVQ 360
  361 ESKNGKAWIA VAGVIHDVGK FIQDHPGGKA LINSAIGKDA TAIFNGGVYN HSNAAHNLLS 420
  421 TMRVGVIRGG CEVEIWKRAQ AENKDIATVT DSSGKKIVRA GLQPTRVTPP VTTADAA

Type	Start	End	Confidence
Non-Cytoplasmic	1	55	0.57
Transmembrane Helix	56	76	0.94
Cytoplasmic	77	82	0.51
Transmembrane Helix	83	105	0.84
Non-Cytoplasmic	106	114	0.52
Transmembrane Helix	115	135	0.72
Cytoplasmic	136	199	0.80
Transmembrane Helix	200	221	0.85
Non-Cytoplasmic	222	227	0.49
Transmembrane Helix	228	249	0.60
Cytoplasmic	250	477	0.52